PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do025670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 509aa    MW: 53297.3 Da    PI: 7.7311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do025670.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16308354455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+ksLq
  Do025670.1 308 VHNLSERRRRDRINEKMRALQELIPHS-----NKTDKASMLDEAIEYLKSLQ 354
                 6*************************7.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-20302366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.152304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.12E-17307358No hitNo description
Gene3DG3DSA:4.10.280.107.6E-20308362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-14308354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-18310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MLKILLFISC SEDDDLIELL WCNGHVVMQS QNNRKLPPRP EKTPGAAAAA TAPASVAQDD  60
EACLWFPFAL ADSLDKDIFS EFFCEAPAAA PVVATTGVEA GKLCRDVPME DDRRGGACAV  120
SDAPRDLMPP PKSTHASGSR QQTMSLADGG DNAGDLSDLV RAGSAGKAAV DAGASSMLSA  180
MGSSICGSNQ VLVQRAVSAP GGGRASGTAR GCSGSALPSA MGSANANASG RGNEATVASS  240
SGRSNYCFGN TTTTEPTSTS NRSSKRKRLD TEDSESPSED AESESAAMLA RKSPQKMTTT  300
RRSRAAEVHN LSERRRRDRI NEKMRALQEL IPHSNKTDKA SMLDEAIEYL KSLQLQVQMM  360
WMGTGISAPP VMFPGVHQYL PRMGVGMGAA AMPSMPRMPF MAPQPVLPNA PVNPVQLSPG  420
YRGHHMPAAV GITEPYAHYL GVNHLQPTPS QGVSYFPMGA KAAVQQNPAA LHHVPGGGMP  480
AAAAPGVLPP ESAPNRGPGA LKCQVAFRP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312317ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9566451e-172EU956645.1 Zea mays clone 1569257 PIL5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004982351.10.0PREDICTED: transcription factor PIF1-like isoform X3
TrEMBLK4A8A40.0K4A8A4_SETIT; Uncharacterized protein
STRINGSi035110m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.11e-35phytochrome interacting factor 3-like 5